CANTATAdb - search

Detailed information on CNT30100888

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003709, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3070256	Oryza rufipogon	Quercus suber	8.64	22.31	96.3	54	forward
CNT301881	Oryza rufipogon	Zea mays	10.4	28.02	89.23	65	forward
CNT30116390	Oryza rufipogon	Oryza nivara	55.04	100	100	344	forward

Expression of CNT30100888

Peptides detected in this lncRNA

>peptide 1 (71 aa)
VLFIVLLFIILRYVIFNQNYLYFETKKVSPGNTHFLLQTTTTIRIRTHHFLLRPALLYIIVIQPAICAVYW*

>peptide 2 (53 aa)
MSQGGADDCAHIQITITTIHIILSKNIDMNVTETKAQAHDNFGRFRHTICLEI*

>peptide 3 (54 aa)
MIKQWGFPVLINKDSGRLPSSSGATVHQDHSFSFHQRGSPGKIHHQGQHGPWSKG

>peptide 4 (30 aa)
MSYSIKIIYILRRRKYLQVTPISFFKRLLQ*

Sequence

>CNT30100888
GTCTTATTTATAGTATTATTATTTATAATATTAAGATATGTCATATTCAATCAAAATTATTTATATTTTGAGACGAAGAAAGTATCTCCAGGTAACACCC
ATTTCCTTCTTCAAACGACTACTACAATAAGAATTCGCACTCACCATTTTCTTCTAAGGCCAGCTCTCCTATATATCATTGTCATACAGCCGGCAATCTG
TGCTGTTTACTGGTAGGCCTTCAAAAAAGAATGTCACAGGGAGGTGCAGATGATTGTGCGCACATCCAGATAACGATTACTACCATACATATAATCCTGA
GCAAAAACATAGACATGAACGTGACTGAAACCAAGGCACAGGCACACGATAATTTTGGAAGATTCAGGCATACGATTTGCCTCGAAATTTAAGCGACAGG
ATCATGATCCCAGGCAGGGTGTTTGCCACGGAGTCATAGGTACGGGACATGCATAGAGAATGATAAAACAATGGGGGTTCCCAGTTCTGATAAACAAGGA
TAGCGGTAGACTTCCTTCTTCATCCGGTGCTACAGTGCACCAGGATCACTCCTTCAGTTTCCACCAAAGAGGTAGCCCAGGGAAGATCCACCACCAGGGG
CAGCATGGACCTTGGTCGAAGGGCG