Detailed information on CNT30100799


BLAST search results

BLAST vs Swiss-Prot:
sp|Q94AK6|SAG20_ARATH, E-value = 6e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30595947Oryza rufipogonOryza meridionalis27.7669.8798.4501forward
CNT30369763Oryza rufipogonOryza glumipatula27.6582.4899.8499forward
CNT30575483Oryza rufipogonOryza barthii25.647.1999.35462forward

Expression of CNT30100799

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MLILSVQQNKLRVLLCNNNRPSFIFSHGLALPWKEYTLT*

>peptide 2 (37 aa)
VAGWISVDISVEFLFIYATNIIGTATDREEKREQNKG*

>peptide 3 (53 aa)
MARTRPGSDLCARSARRLCHRHLGLDGGGGGAEEEAWLELEEEMAAVVLACTQ*

>peptide 4 (41 aa)
MLLVTLLIQLSDKQAKATLLNWLASCSSGSGINHANLKQLS*

>peptide 5 (75 aa)
MTVEPKASTERGEKRNLDSPWSAPVRRRIMCWCAGGPWNHHSRSGASSSCALRASPELSASYSRSTRNLASCSSG*

>peptide 6 (87 aa)
MEPPLEVRREQLLRPARVPGVERLVQPQHQELGVLLLRLIPCAVQLCQLRHRRRRLARRRRRSLPVVSQLLARAPLRLRSASAPPGV*

>peptide 7 (34 aa)
MQQQQTIIHIQPRFSFTVEGVHTYIIHNDLDQSY*

>peptide 8 (72 aa)
MSFEFVLRWRGRGPAATCARGRRGGSATGTWAWTAAAAAPKRRRGWSWRKKWRRWSWRAPSRAGGCRRCPRR*

Sequence

>CNT30100799
GTGGCCGGCTGGATTTCGGTTGACATATCAGTAGAATTCCTTTTTATTTACGCCACAAATATAATTGGGACAGCGACAGATCGTGAGGAAAAGAGAGAAC
AGAACAAAGGCTAGAGAGCAAAGAAATGACATCGCTTACTTCTCTAAAAAAAAAAAGAAGAAAAGGAAATGACATCGCTTGAGAGCAAAGAAATTCCGAA
CTCGCTGTTTAATTTTTCTTCCGGATCTACCGGGAATCCGTAGGAACTTCACATCAAAGAGGAGGCTATCATAGCCTTGTTGGAAAGCAACATCCTGAAC
CTGTCCCCCTTGGATTTTGTAGATTTTTCTCCTCGGATTAGGGGTTCTCCAGAGCAGCTGGACAACTTATCCTCACAGCTTATCCAAACAAAACTTTGAT
TTCGTTGTGGTTTTCCGAAATCCAAACCATCAACCATGCATTCATTGATCAGGGAGGTGCCGTTCAGCTCGTGACTTCCATAAGTGTGGGGCGAATTAGT
CCATCCCCTTTCTTCACGCAAGCAGATGTGTTCCTTGCTCAAACTTCGTAGGAGTTAATTATTCAGTTCATGGCCAGATTAAAATAAGCAGAGTTCATTG
CTCGGTTCATTTGGAACCCAAGAAGGAATGAAAATGGGGGGAAAGAAGAGAAAAGAAGTACCTGTACATCACATATGTTGATTTTAAGTGTCCAACAAAA
CAAGCTACGAGTACTTTTATGCAACAACAACAGACCATCATTCATATTCAGCCACGGTTTAGCTTTACCGTGGAAGGAGTACACACTTACATAATCCATA
ATGACTTGGACCAAAGCTACTGATGCTACTGGTCACACTGCTGATTCAGCTTTCAGACAAGCAAGCAAAAGCAACACTACTTAACTGGCTGGCTAGTTGC
AGTAGTGGTAGTGGGATTAATCACGCAAACCTGAAGCAGCTCAGTTGAGCTGAGCGGCTTTAGCCCATAAGCAATAAACTATAGCTAGTGACTTCACTCA
GTGCGTGCGCTTCCGTTTTTATTTATTTAGCTAATCACTATTGATAAGTATCGCTTGATTTTTTTATATGTGATTAATTTAGGGAAGCTTTTTGCGCCTT
GAGTTCTTGATGTCTTTTGAGTTCGTTCTTAGATGGCGAGGACGAGGCCCGGCAGCGACTTGTGCGCGCGGTCGGCGCGGCGGCTCTGCCACAGGCACTT
GGGCTTGGACGGCGGCGGCGGCGGCGCCGAAGAGGAGGCGTGGTTGGAGTTGGAGGAAGAAATGGCGGCGGTGGTCTTGGCGTGCACCCAGTAGAGCTGG
CGGGTGTCGTCGGTGCCCTCGGCGATGACGGTGGAGCCGAAGGCGTCGACGGAGCGAGGGGAGAAGAGGAACCTTGACTCGCCGTGGTCGGCGCCGGTGA
GGAGGCGCATCATGTGCTGGTGCGCCGGCGGCCCATGGAACCACCACTCGAGGTCCGGCGCGAGCAGCTCCTGCGCCCTGCGCGCGTCCCCGGAGTTGAG
CGCCTCGTACAGCCGCAGCACCAGGAACTTGGCGTCCTGCTCCTCCGGCTGATCCCTTGCGCCGTCCAGCTCTGCCAGCTCCGACACCGACGCCGACGCC
TCGCGCGCCGCCGCCGCCGTTCCCTGCCTGTGGTTAGCCAGCTCCTGGCGCGAGCCCCGCTTAGGCTCCGATCGGCCTCCGCTCCTCCCGGTGTTTGACA
CGAAGTCGAGGAAGCGAGCTCTAGATCACGAGATCGATTGGCGCTCAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGAGAAGAGATCGAGGTGGAT
CGCTC