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Detailed information on CNT30100787


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692203Oryza rufipogonOryza sativa81.8240.91100801forward
CNT30596498Oryza rufipogonOryza meridionalis69.0570.0584.62676forward
CNT30370658Oryza rufipogonOryza glumipatula29.1143.7194.04285forward

Expression of CNT30100787

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MKYDVDRMIKPLMNAFVWCMHMRDTSIVGIDGADNRTLQHVRSSGDGAESVIPLIQ*

>peptide 2 (69 aa)
MARSIGDRATTPAATSIGDLLGCGGIHLQQHGVPRRCRPLWRRYHGINPSALPIYAEAAVASPWLTDRS*

>peptide 3 (33 aa)
INPVTGCTHRTRFHFFKEYSPIMFNYPALIGRF*

>peptide 4 (29 aa)
MRLASIKPVQRSRQALSSFFQFCLINFFL*

Sequence

>CNT30100787
GATCAACCCTGTTACCGGATGCACTCACCGGACCCGTTTCCATTTCTTTAAAGAATATTCTCCTATAATGTTTAATTATCCCGCACTAATTGGTCGGTTC
TGAACAGATCGTATAAATCCCTTGGTTCCCATCCCATCCGCGACGGCAATCTCTCCGTTGTATTCGGATCGAGCGCTAGCTACCGGCGACTCGAAGCGGA
GGTATGGCACGATCCATTGGGGATCGAGCAACCACGCCGGCGGCAACATCCATCGGTGATTTGCTGGGATGCGGCGGCATTCATCTGCAGCAACACGGCG
TTCCTAGGCGGTGCCGGCCCTTGTGGCGACGGTATCACGGCATCAATCCATCGGCTCTTCCTATCTACGCGGAGGCGGCGGTGGCTTCACCTTGGCTGAC
CGATCGAAGCTAGCACCGGTGACCTTAACAAGGACGCCATCAATATTTCGGCAAGCCACTGTGGTCATGCGGCTGGCATCGATCAAGCCCGTGCAACGAT
CAAGGCAAGCCCTTTCTTCCTTCTTCCAGTTTTGTTTGATTAATTTTTTCCTATAGAACGATAATACATACTCTTCCTTTTCCTTTTTCTATTGGGTATA
TCTCTGTTATTGTTTGCAGACGAGGATGCAGACATGAAGTATGACGTTGATAGAATGATTAAGCCTCTGATGAATGCATTTGTTTGGTGCATGCACATGC
GAGACACATCTATCGTGGGCATAGATGGTGCTGACAACAGGACACTCCAGCATGTACGGTCGTCTGGCGACGGTGCTGAGTCCGTGATTCCGTTGATCCA
GTAAGCTGACACATGAATACTCGTTTCGCTCTCGGGCGCGTGTTTGGCGTGATCCCGTCGATGCTAACCGATTTGTTAGCCTGCATGTAGAATGTCTATT
CGGAATTCAGTGCACTTCTAGCGTATTTCATTCATTTAGCTTTATTCAGAATGCAGCAACCCGATACTTTGCTAGTGAT