Detailed information on CNT30100764


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694940Oryza rufipogonOryza sativa25.9324.0594.2970forward
CNT30672185Oryza rufipogonSetaria viridis36.6718.193.9499forward
CNT30520486Oryza rufipogonSetaria italica36.6718.8293.9499forward
CNT30221871Oryza rufipogonHordeum vulgare39.2646.0991.51106forward
CNT30434905Oryza rufipogonAegilops tauschii41.4812.9993.75112forward
CNT30251998Oryza rufipogonAvena sativa34.8132.6489.3694forward
CNT30659005Oryza rufipogonTriticum dicoccoides39.2637.3289.62106forward
CNT30450016Oryza rufipogonSaccharum spontaneum41.1110.0593.69111forward
CNT30680544Oryza rufipogonTriticum urartu39.2641.0990.57106forward
CNT30352666Oryza rufipogonEragrostis tef41.1113.7291.89111forward
CNT30362958Oryza rufipogonSorghum bicolor41.1122.5292.79111forward
CNT30370761Oryza rufipogonOryza glumipatula34.449.3892.4793forward
CNT30325402Oryza rufipogonAsparagus officinalis26.36.1987.3271reverse complement
CNT30147603Oryza rufipogonBrachypodium distachyon32.2229.1989.6687forward
CNT30496353Oryza rufipogonDigitaria exilis41.119.792.79111forward

Expression of CNT30100764

Peptides detected in this lncRNA

>peptide 1 (88 aa)
VSRSVPVLRAAGGCGGSTRRLWVWSKKRSSSSSSSKASSGRRPARESAISSSCWCSWNQWSRNQAVVLTRSHHCGEKSSTCRNAAGMKS

>peptide 2 (88 aa)
SESVGTSLESGGRLRGIDEEVMGLVEEEVVVVVVVEGVVGEEAGEGVGHLVELLVLVEPVVAEPGGGLDEVPPLRREVLHLPERRRDEE

Sequence

>CNT30100764
GAGTGAGTCGGTCGGTACCAGTCTTGAGAGCGGCGGGCGGCTGCGGGGGATCGACGAGGAGGTTATGGGTCTGGTCGAAGAAGAGGTCGTCGTCGTCGTC
GTCGTCGAAGGCGTCGTCGGGGAGGAGGCCGGCGAGGGAGTCGGCCATCTCGTCGAGCTGCTGGTGCTCGTGGAACCAGTGGTCGCGGAACCAGGCGGTG
GTCTTGACGAGGTCCCACCACTGCGGCGAGAAGTCCTCCACCTGCCGGAACGCCGCCGGGATGAAGAGCG