Detailed information on CNT30100608


BLAST search results

BLAST vs Swiss-Prot:
sp|P20144|WUN1_SOLTU, E-value = 3e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30496416Oryza rufipogonDigitaria exilis20.679.3586.21174forward

Expression of CNT30100608

Peptides detected in this lncRNA

>peptide 1 (37 aa)
STFMQQQQTIIHIQPRFSFTVEGVHTYIIHNDLDQSY*

>peptide 2 (92 aa)
MSFEFVLRWRGRGPAATCARGRRGGSATGTWAWTAAAGDGEVGVEVLPELGDYPIGADGPGVHPVELAGVVGALGDDGGAEGVDGARGEEEP*

>peptide 3 (70 aa)
MTVEPKASTERGEKRNLDSPWSAPVRRRIMCWCAGGPWNHHSRSGASSSCALRASPELSASYSRSTRNLAS

>peptide 4 (41 aa)
MLLVTLLIQLSDKQAKATLLNWLASCSSGSGINHANLKQLS*

>peptide 5 (30 aa)
MARTRPGSDLCARSARRLCHRHLGLDGGGG*

>peptide 6 (34 aa)
MEPPLEVRREQLLRPARVPGVERLVQPQHQELGVL

Sequence

>CNT30100608
GAGTACTTTTATGCAACAACAACAGACCATCATTCATATTCAGCCACGGTTTAGCTTTACCGTGGAAGGAGTACACACTTACATAATCCATAATGACTTG
GACCAAAGCTACTGATGCTACTGGTCACACTGCTGATTCAGCTTTCAGACAAGCAAGCAAAAGCAACACTACTTAACTGGCTGGCTAGTTGCAGTAGTGG
TAGTGGGATTAATCACGCAAACCTGAAGCAGCTCAGTTGAGCTGAGCGGCTTTAGCCCATAAGCAATAAACTATAGCTAGTGACTTCACTCAGTGCGTGC
GCTTCCGTTTTTATTTATTTAGCTAATCACTATTGATAAGTATCGCTTGATTTTTTTATATGTGATTAATTTAGGGAAGCTTTTTGCGCCTTGAGTTCTT
GATGTCTTTTGAGTTCGTTCTTAGATGGCGAGGACGAGGCCCGGCAGCGACTTGTGCGCGCGGTCGGCGCGGCGGCTCTGCCACAGGCACTTGGGCTTGG
ACGGCGGCGGCGGGTGACGGTGAGGTCGGTGTTGAAGTACTCCCTGAGCTGGGTGATTACCCCATCGGGGCCGACGGTCCAGGCGTGCACCCAGTAGAGC
TGGCGGGTGTCGTCGGTGCCCTCGGCGATGACGGTGGAGCCGAAGGCGTCGACGGAGCGAGGGGAGAAGAGGAACCTTGACTCGCCGTGGTCGGCGCCGG
TGAGGAGGCGCATCATGTGCTGGTGCGCCGGCGGCCCATGGAACCACCACTCGAGGTCCGGCGCGAGCAGCTCCTGCGCCCTGCGCGCGTCCCCGGAGTT
GAGCGCCTCGTACAGCCGCAGCACCAGGAACTTGGCGTCCTG