Detailed information on CNT30100326


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004177, E-value = 6e-24

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691142Oryza rufipogonOryza sativa85.3516.394.91373forward
CNT30369613Oryza rufipogonOryza glumipatula10040.2494.97437forward
CNT30115577Oryza rufipogonOryza nivara10036.1894.28437forward

Expression of CNT30100326

Peptides detected in this lncRNA

>peptide 1 (54 aa)
DVPTPSFTLNSSQTRRPATLTIPEPTNPREKALCLSAALISITGRGRDDRRQPL*

>peptide 2 (69 aa)
TCQRRASPSTPLRRVAQPHSPSQSRRIRERRPSASPLLSSPSQAAGETTVDSLSEPRQSPGTKASPMMP*

Sequence

>CNT30100326
TGACGTGCCAACGCCGAGCTTCACCCTCAACTCCTCTCAGACGCGTCGCCCAGCCACACTCACCATCCCAGAGCCGACGAATCCGAGAGAGAAGGCCCTC
TGCCTCTCCGCTGCTCTCATCTCCATCACAGGCCGCGGGAGAGACGACCGTCGACAGCCTCTCTGAGCCACGCCAATCGCCGGGAACGAAAGCCTCGCCG
ATGATGCCCTGAAGCACGCACCGCGCCCTGAAGCACGCATCGGAGCGCCGCTGTTTCGTCATCATTGTCGCCTGGCCGAATCCATCTATCTCAAGCCAAG
CCGCTGCGCCGTGAAGTTTGCCTCGACTTCCTCTTCAAGACGCCTCAAGAATCACCATCGGAGACACTAGGAGCACGGAGAACACGCCCCTTTTTCCTCG
GCGCCGATCTGAACCTGCCACCGTCGCTACTGCCGAA