Detailed information on CNT30100301


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552605Oryza rufipogonOryza glaberrima100.1594.1897.59663forward

Expression of CNT30100301

Peptides detected in this lncRNA

>peptide 1 (99 aa)
MSSLISHMDGTCWNPAHQHLLLQLHHNCHILQHHHRHPERHHRHLHTRSHHNHHHILIQIQHYLHSHTLLCHNHMQYYHNNLLQLIGNQHHTHSHHCCHC

>peptide 2 (41 aa)
MATVSCLRRQCHYRTKYNRSIIPILFLTQKALFEGSNSLSI*

>peptide 3 (48 aa)
MVPAGTPPTSTSCSSSTITAISSSTTIGTRSATIGTSIQGATITTTIS*

>peptide 4 (36 aa)
VNGSLTYKGRWQQLAACEGNVTTAQNIIGQSYQYCS*

>peptide 5 (37 aa)
MCSFYSRLRMGSATKITQLVQLRDNLMKLNKCSGAAD*

Sequence

>CNT30100301
GTTAACGGTTCCCTTACATATAAGGGCAGATGGCAACAGTTAGCTGCTTGCGAAGGCAATGTCACTACCGCACAAAATATAATAGGTCAATCATACCAAT
ACTGTTCCTAACACAAAAGGCTTTGTTTGAGGGTTCTAATTCTCTCAGCATATGAAAACTAACGGAATACAACATAGCTTTCATGTGTAGCTTCTACAGC
AGACTACGGATGGGTTCAGCGACTAAAATTACACAGTTGGTCCAGTTACGAGATAATTTGATGAAACTAAATAAATGTTCTGGTGCCGCTGATTGAGTAA
CCCAAGATAAAACGCTGATTTTCCAGGAGGTGCACTTATTGTATCCTAGAAAAAACTCTCATGAGTTCACTCATTTCCCATATGGATGGTACCTGCTGGA
ACCCCGCCCACCAGCACCTCCTGCTCCAGCTCCACCATAACTGCCATATCCTCCAGCACCACCATAGGCACCCGGAGCGCCACCATAGGCACCTCCATAC
AAGGAGCCACCATAACCACCACCATATCCTGATCCAAATCCAGCATTACCTCCATAGCCATACCCTCCTCTGCCATAACCATATGCAGTACTATCATAAT
AACCTCCTCCAGCTGATCGGTAACCAGCACCATACCCATAGCCACCACTGCTGCCACTGCCG