Detailed information on CNT30100209


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZQH3|SC23D_ARATH, E-value = 2e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690645Oryza rufipogonOryza sativa47.2139.2698601forward
CNT30552498Oryza rufipogonOryza glaberrima42.7377.7196.69544forward
CNT30465193Oryza rufipogonSaccharum spontaneum7.7846.0584.8599forward
CNT30108255Oryza rufipogonOryza longistaminata27.9775.9196.63356forward

Expression of CNT30100209

Peptides detected in this lncRNA

>peptide 1 (45 aa)
SLISISLFSLGRPSGGGEEVRRPAGNAGEGATRRRWAGSRQEPRR*

>peptide 2 (39 aa)
MEEDGRSEAQRCESCDEQPLAIGATTLGHSQIGPARLPL*

>peptide 3 (39 aa)
MVGTWGAARRGRRLLSSLYAVRERREKMKSCSSNLYAVI*

>peptide 4 (86 aa)
MSALTDALPRRPALLPPSPRPCEAATRRGRRCRWSRVHVPPPSRSPTSHIRRRGGAPPLPFCCLTQAWWPPPVAAAAAGSPPLPPRP

>peptide 5 (70 aa)
MPVVKDVFIPPDTEEDGLPAALEDAMPLISFLAPLCKKCYSLFSQFEHVIMTKINLQADRHMQRSNCCCP*

>peptide 6 (67 aa)
LSNLYLTLLSGQAVRWWGGGPTAGRQCGRRGDAAAVGREQAGTAAVGAGATEDGGGRSERSSTMRVL*

>peptide 7 (48 aa)
MREKGRRGGGGPGAGRNRGGRRRGDGGWRRTVGAKLNDASPVTSSHLR*

Sequence

>CNT30100209
CTCTCTAATCTCTATCTCACTCTTCTCTCTGGGCAGGCCGTCCGGTGGTGGGGAGGAGGTCCGACGGCCGGCCGGCAATGCGGGAGAAGGGGCGACGCGG
CGGCGGTGGGCCGGGAGCAGGCAGGAACCGCGGCGGTAGGCGCAGGGGCGACGGAGGATGGAGGAGGACGGTCGGAGCGAAGCTCAACGATGCGAGTCCT
GTGACGAGCAGCCACTTGCGATAGGGGCGACGACGCTCGGGCATTCCCAAATTGGCCCGGCGCGACTGCCGCTCTGATTGAGACCAGTGGAGGCGGCTCC
GGTGTGATTTGGTGGCGAGTAAGGACGGAGCGAGCTCTGCCTCTATGTGGCGGGGCTAGGGTCTTCTAGCGACGAGGCGGCTTAGGGTGAGAAGCCCGTG
GGCGGCTGATGGGGAGAAGAGGTTGTTGCTGAGCTTGCTCAAGCGGGCGGCCGCGGGCGGCATCATGGTTGGGACTTGGGGCGCGGCTAGGCGAGGGAGA
AGGTTGTTGTCGAGCTTGTATGCTGTTAGAGAAAGGAGAGAGAAAATGAAATCATGTAGCTCGAATTTGTATGCTGTTATTTGATAGTATCTGCAGGTTC
TGAAGAGTTCCTGGAGCTTATTAAGAGTGCGCTTCTGGCAGCACTAGAAGCTCTGATTCCAGGCTCCCTGTTTAGACAGTATGATGTACAAGGTCCAATG
CCAGTTGTAAAAGATGTTTTTATCCCTCCAGACACAGAAGAAGATGGGCTGCCTGCTGCCCTTGAAGATGCCATGCCTCTAATTTCATTTTTGGCCCCTC
TATGTAAGAAGTGTTACAGTTTGTTTAGTCAATTTGAACATGTAATAATGACAAAGATAAATTTACAAGCAGATCGACACATGCAAAGATCGAATTGCTG
CTGCCCTTGATACATTGCGATTTACGACATACATCTTCGTGGGAGCGAGGTGCTGCTTCTGGGCAGGAAACTGATACTGTTTTACTTGGTGGCCGAGGTT
TTGGAGCAGCCATGTCTGCTCTAACTGACGCCCTCCCCCGACGTCCTGCTCTGCTCCCGCCGTCGCCTCGCCCGTGTGAAGCCGCTACACGCCGAGGGCG
TCGCTGCCGCTGGAGCCGGGTCCACGTCCCGCCGCCGTCGAGGTCTCCCACAAGCCACATCCGGCGGAGAGGAGGCGCCCCTCCTCTGCCCTTTTGCTGC
CTGACCCAGGCGTGGTGGCCTCCTCCCGTCGCAGCTGCCGCCGCCGGTTCTCCTCCTCTCCCGCCTCGTCCCG