CANTATAdb - search

Detailed information on CNT30100040

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30115760	Oryza rufipogon	Oryza nivara	56.56	91.45	98.83	599	forward

Expression of CNT30100040

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MFTRLGYLEGILVVICVFMFSIRLASHTGIETGKRGNSHRCDGQKRIGSDNVTIGKI*

>peptide 2 (39 aa)
MHCLRKVGTGKLACERLSGRRRKKEKKNRKGALFPRRPR*

Sequence

>CNT30100040
AATGATCAAGACACGCATGAGTGAGTAACAAAAAATGCATTGTCTTAGAAAAGTGGGAACTGGGAAGCTTGCGTGTGAGCGCCTGAGCGGTAGGAGAAGA
AAAAAAGAAAAAAAAAACAGAAAAGGAGCGTTGTTTCCTCGCCGCCCCCGATAATTATCCGCATGTGCAGTTAGTGAAAAAAAAAACAAAAAAGGAGCAT
CGTTCCTTCATCCTCTTTCCTCGTCCTCATCGCCACTCGTCATTCCTCTCAGCTCGCCGCCCCGATTCATTTGCTTGCCGCCGGATCTGACGCCTTTGGA
CTCGTGGCCAACGAATCCCGCGGCGGGAGGAAGGAGAGTGTGCTGAATCCCGTTGGATTCGGCCGCCTAGAGGCCGGCGGACACTGGATCCAACCGCCTT
GAAGCCAAAGGCCGCCCGATCCACAGCGCAGCAGTGGCGGCGGCGACGGCCTCAGCCTAGAGCTAGCAGTGGTGGTGGTGACGGCCTCATCCTCCGACGA
GCAGCGGCGGCCTCCCCCTTCTCCTTGATGGCCGCATGGTAGGTGTGGATCGAAGGTGACCACGGCTGAGAGGGAGATTGATGATGGTGTTGGCGGTGAG
TCAGTTTGGTTCTCCTGTTATTTTGTTGAATGTCTAATATGGCAGAAGAATTTTGATCCGTGATTTGGTTCTGCTGTTGTTGATGACGTTGACGGATAAT
TGAATCAATGTAAATTTCCTCTTCTTGATTTCTAAGGTGCTTCTCATCTTTGACCTGTGGATGTGGAATTTTTTTTCCTAACTTATAAATGTGGATGGGG
CATTTGGGCAACTGTGGATGTGTGATTCTTCGTAATCTGTAATCGTGGATGGGGATCGAGGGGGGGGGGGGATGTTTACAAGATTGGGTTATCTTGAGGG
AATTTTGGTTGTAATTTGTGTGTTTATGTTTTCGATTCGGTTAGCTTCTCATACGGGCATTGAGACAGGGAAGCGGGGAAATTCACATCGATGTGACGGA
CAAAAACGGATTGGCTCGGATAATGTGACGATTGGAAAAATATGAATCTTTTAATTAGT